Remove `stop_wait_time` and `readiness_timeout` from the root config
and remove `deploy_timeout` and `drain_timeout` from the proxy config.
Instead we'll just have `deploy_timeout` and `drain_timeout` in the
root config.
For roles that run the proxy, they are passed to the kamal-proxy deploy
command. Once that returns we can assume the container is ready to
shut down.
For other roles, we'll use the `deploy_timeout` when polling the
container to see if it is ready and the `drain_timeout` when stopping
the container.
Commander had version/destination solely to incrementally accumulate CLI
options. Simpler to configure in one shot.
Clarifies responsibility and lets us introduce things like
`abbreviated_version` in one spot - Configuration.
